I got this off Time Design I'm not sure how accurate but it's a starting point:
1916 Mutiny of the Bounty: BOUNTY
1922 Down to the Sea in Ships: CHARLES W MORGAN and WANDERER (Both Whalers)
1925 Captain Salvation: SANTA CLARA (Fully-rigged Ship)
1925 The Splendid Road: INDIANA (Fully-rigged Ship)
1926 Old Ironsides: USS CONSTITUTION Fully-rigged Tripolitian pirate vessel LLEWLLYN J. MORSE
S.N. CASTLE (Barkentine)
1927 The Blood Ship: BOHEMIA and INDIANA
1927 The Wreck of the Hesperus: BOHEMIA and INDIANA
1927 The Yankee Clipper: BOHEMIA and INDIANA
1930 The Sea Wolf: GHOST BEAR OF OAKLAND
1931 The Suicide Fleet: BOHEMIA was sunk
1931 The Viking: The wooden sealer, built Norway 1881, on which Fridtjof Nansen made his first trip in 1882
1933 In the Wake of the Bounty: BOUNTY
1934 Treasure Island: NANUK
1935 Mutiny on the Bounty: Bounty, PANDORA, LILY, NANUK, PACIFIC QUEEN, ex. STAR OF ALASKA (nowadays BALCLUTHA) Ships used in the 1935 MGM Mutiny on the Bounty
1937 Souls at Sea: Steel bark KAIULANI was used as both a white-hulled packet ship with yards on the mizzen, and a black-hulled bark
1937 Slave Ship: LOTTIE CARSON (Bark)
1937 Souls at Sea: VIGILANT, WILLIAM BROWN, STAR OF FINLAND, LOTTIE CARSON (Bark)
1937 Wallaby Jim of the Islands: LOTTIE CARSON (Bark)
1939 Rulers of the Sea: FALCON, SIRIUS, METHA NELSON, GOLDEN STATE
1937 South of Pago-Pago: LOTTIE CARSON (Bark)
1940 The Sea Hawk: Two full-scale ships constructed especially for this film
1942 Reep The Wild Wind: JUBILEE
1942 Saboteur: burned-out SS NORMANDIE
1942 The Black Swan: The BLACK SWAN, The REVENGE (film ships)
1949 Down to the Sea in Ships:Seemannslos
1950 Treasure Island: HISPANIOLA, Sultan, RYELANDS (three-masted schooner)
1951 Alba de América: SANTA MARIA IV
195? Christopher Columbus: (British production) SANTA MARIA IV
195? The last voyage of Sinbad: (US movie) SANTA MARIA IV
1951 Anne of the Indies
1951 Captain Horatio Hornblower R.N.: HMS Lydia, MARCEL B. SURDO (Ital. Brigantine), Lydia (Film Ship)
1952 Blackbeard the Pirate
1952 The Crimson Pirate: Lydia (Film Ship)
1952 Fair Wind to Java: CARIBEE (Tops'l Schooner)
1952 The Crimson Pirate: MARCEL B. SURDO (Ital. Brigantine)
1952 The Master of Ballantrae: MARCEL B. SURDO (Ital. Brigantine)
1952 The World in His Arms
1953 The Master of Ballantrae
1953 Der Freibeuter: Lydia (Film Ship)
1954 Moby Dick: PEQUOD (ESSEX), RACHEL RYELANDS (three-masted schooner)
1956 Moby Dick: PEQUOD (Essex), SULTAN
1956 The Buccaneers (TV Series): SULTAN
1957 Yangtse Incident: AMETHYST (sister MAGPIE was used for some scenes)
1958 John Paul Jones: ANGOLINA H, MARCEL B. SURDO (Ital. Brigantine)
1958 Twilight of the Gods: ALBATROSS
1958 Windjammer (TV): CHRISTIAN RADICH
1962 Mutiny on the Bounty: Bounty BOUNTY BOUNTY II
1961 The Count of Monte Cristo: Lydia (Film Ship)
1963 La Fayette: Lydia (Film Ship)
1963 Donavan's Reef: SULTAN
1964 The Long Ships
1965 Hawaii: Whaling supply vessel Romance (Brigantine), CARTHAGINIAN II
1965 High Wind in Jamaica: CLORINDA, CRUZ DEL SUR, CARIBEE
1966 Hawaii: WANDIA ex. CARTHAGINIAN (Bark), GRETHE
1966 The Sand Pebbles : San Pablo, SS LANE VICTORY (engine was used)
1969 Quemada: ROMANCE (Brigantine)
1970 The Hawaiians: THETIS, CATHAGIAN (Whaler) Baltic Trader posed as both the Thetis and the whaler Cathagian
1974 The Godfather II: MOSHULU (Four-masted Bark), PIONEER (Schooner)
1975 Farewell My Lovely: SS CATALINA
1975-77 Poldark : MARQUES
1976 Swashbuckler: Golden Hind
1977 Roots: LORD LIGONIER
1977 The Fight Against Slavery: MARQUES
1977 The Voyage of Charles Darwin (BBC TV-Series): BEAGLE, MARQUES
1979 Dracula:MARQUES
1980 The Blue Lagoon: EYE OF THE WIND
1981 Time Bandits: TIME BANDIT
1982 The Scarlet Pimpernel: PHOENIX OF DELL QUAY
1983 Nate and Hayes
1983 Savage Islands: EYE OF THE WIND
1983 Yellowbeard: BOUNTY II
1984 Once upon a time in America: ACTIVE
1984 The Bounty: BOUNTY, BOUNTY III
1984 The Master of Ballantrae: MARQUES
1985 Revolution: KASKELOT
1985 The last Place on Earth (TV): TERRA NOVA, KASKELOT
1985 Treasure Island: HISPANIOLA, EARL OF PEMBROKE
1986 Pirates: (Roman Polanski) NEPTUNE, Spanish Galleon especially built for this movie
1986 Tai-Pan: EYE OF THE WIND
1989 Amazing Grace: ROMANCE (Brigantine)
1990 Shipwrecked: Gestrandet
1990 Treasure Island TV: HMS Bounty appears in this film as the Hispaniola.
1991 Hook (Steven Spielberg)
1991 Shogun: ERASMUS, GOLDEN HINDE
1992 Christopher Columbus: The Discovery
1993 The Three Musketeers: KASKELOT
1995 Cutthroat Island: MORNING ROSE, EARL OF PEMBROKE,KASKELOT
1996 Moll Flanders: EARL OF PEMBROKE, PHOENIX OF DELL QUAY
1996 Return to Treasure Island: KASKELOT
1996 White Squall: ALBATROSS,EYE OF THE WIND (re-rigged), EARL OF PEMBROKE
1997 A Respectable Trade (TV): EARL OF PEMBROKE, KASKELOT
1997 Amistad (Seven Spielberg):AMISTAD, CALIFORNIAN, PILGRIM
1997 Amy Foster - Swept from the Sea: KASKELOT
1998 Frenchman´s Creek: La MOUETTE, EARL OF PEMBROKE, PHOENIX OF DELL QUAY
1998 Lost at Sea: The Search for Longitude (TV): EYE OF THE WIND
1998 Moby Dick (TV Movie): PEQUOD, BOUNTY II
1999 David Copperfiled (TV), KASKELOT
1999 Shaka Zulu - The Citadel: PHOENIX OF DELL QUAY
1999 Wives & Daughters: EARL OF PEMBROKE
2000 The Quest for Captain Kidd Adventure Galley: LADY WASHINGTON
2000 Longitude (TV): EARL OF PEMBROKE, KASKELOT
2001 Lady of the Sea: ROMANCE (Brigantine)
2001 CDN/I Sea Wolf - The Pirate´s Curse: SEEWOLF
2002 Shackleton (TV): ENDURANCE, KASKELOT
2002 Random Passage: EARL OF PEMBROKE
2002 The Count of Monte Cristo: EARL OF PEMBROKE
2003 Master and Commander - The Far Side of the World: HMS SURPRISE (ex HMS Rose)
2003 Pirates of the Carribean: Black Pearl, Lady Washington
2004 Troy: Troja Greek Triremes
2004 Windstärke 8 (TV): BREMEN, FRIDTJOF NANSEN
2005 Blackbeard
2005 The Incredible Journey of Mary Bryant
2005 The New World: HALF MOON
2005 To the Ends of the Earth (TV, BBC Drama) war ship - a 74-gun third rate ship of the line
2006 Pirates of the Carribean II: BLACK PEARL, FLYING DUTCHMAN, HMS BOUNTY
2006 Blackbeard: Terror at Sea: La CONCORDE, HMS BOUNTY?
2007 Pirates of the Carribean III - At World´s End: FLYING DUTCHMAN, ENDEAVOUR, EMPRESS Junk, Sloop PROVIDENCE, HMS BOUNTY, ST. PETER, UNICORN
2007 Elizabeth - The Golden Age: Great computer animated battle of England against the Spanish Armada 1588